Alexander Churkin

According to our database, Alexander Churkin authored at least 18 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans.

Alma Davidson, Marina Parr, Franziska Totzeck, Alexander Churkin, Danny Barash, Dmitrij Frishman, Tamir Tuller

Proceedings of the Comparative Genomics - 21st International Conference, 2024

2022

IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations.

Alexander Churkin, Yann Ponty, Danny Barash

BMC Bioinform., 2022

2020

incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs.

Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash

Bioinform., 2020

The HHD Dataset.

Irina Rabaev, Berat Kurar Barakat, Alexander Churkin, Jihad El-Sana

Proceedings of the 17th International Conference on Frontiers in Handwriting Recognition, 2020

2018

Design of RNAs: comparing programs for inverse RNA folding.

Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash

Briefings Bioinform., 2018

A Biologically Meaningful Extension of the Efficient Method for Deleterious Mutations Prediction in RNAs: Insertions and Deletions in Addition to Substitution Mutations.

Alexander Churkin, Danny Barash

Proceedings of the Bioinformatics Research and Applications - 14th International Symposium, 2018

2017

A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics.

Vladimir Reinharz, Alexander Churkin, Harel Dahari, Danny Barash

Frontiers Appl. Math. Stat., 2017

2012

On topological indices for small RNA graphs.

Alexander Churkin, Idan Gabdank, Danny Barash

Comput. Biol. Chem., 2012

Efficient procedures for the numerical simulation of mid-size RNA kinetics.

Iddo Aviram, Ilia Veltman, Alexander Churkin, Danny Barash

Algorithms Mol. Biol., 2012

2011

The RNAmute web server for the mutational analysis of RNA secondary structures.

Alexander Churkin, Idan Gabdank, Danny Barash

Nucleic Acids Res., 2011

RNAexinv: An Extended Inverse RNA Folding from Shape and Physical Attributes to Sequences.

Assaf Avihoo, Alexander Churkin, Danny Barash

BMC Bioinform., 2011

Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction.

Danny Barash, Alexander Churkin

Briefings Bioinform., 2011

2010

Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements across genotypes reveals Evidence for Direct Evolution of Genetic Robustness in HCV.

Alexander Churkin, Moriah Cohen, Yonat Shemer-Avni, Danny Barash

J. Bioinform. Comput. Biol., 2010

2008

An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions.

Alexander Churkin, Danny Barash

BMC Bioinform., 2008

2006

Structural Analysis of Single-Point Mutations Given an RNA Sequence: A Case Study with RNAMute.

Alexander Churkin, Danny Barash

EURASIP J. Adv. Signal Process., 2006

RNAmute: RNA secondary structure mutation analysis tool.

Alexander Churkin, Danny Barash

BMC Bioinform., 2006

2005

Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin.

Alexander Churkin, Danny Barash

Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2005

RNAMute: RNA Secondary Structure Mutation Analysis Tool.

Alexander Churkin, Ornit Elgad, Oshrat Petgho, Danny Barash

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005