Alessandro Sette

According to our database, Alessandro Sette authored at least 46 papers between 1989 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins.

Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Kosaloglu-Yalçin, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters

BMC Bioinform., December, 2023

The Cancer Epitope Database and Analysis Resource (CEDAR).

Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., January, 2023

2022

Bioinformatic and Experimental Analysis of T Cell Immune Reactivity to SARS-CoV-2 and its Variants.

Alison Tarke, Alba Grifoni, Alessandro Sette

Frontiers Bioinform., 2022

A comprehensive analysis of the IEDB MHC class-I automated benchmark.

Raphael Trevizani, Zhen Yan, Jason A. Greenbaum, Alessandro Sette, Morten Nielsen, Bjoern Peters

Briefings Bioinform., 2022

2021

An immunologically friendly classification of non-peptidic ligands.

Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette

Database J. Biol. Databases Curation, 2021

2020

Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system.

Sinu Paul, Nathan P. Croft, Anthony W. Purcell, David C. Tscharke, Alessandro Sette, Morten Nielsen, Bjoern Peters

PLoS Comput. Biol., 2020

A structured model for immune exposures.

Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2020

2019

The Immune Epitope Database (IEDB): 2018 update.

Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., 2019

IEDB-AR: immune epitope database - analysis resource in 2019.

Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters

Nucleic Acids Res., 2019

Benchmark datasets of immune receptor-epitope structural complexes.

Swapnil Mahajan, Zhen Yan, Martin Closter Jespersen, Kamilla Kjærgaard Jensen, Paolo Marcatili, Morten Nielsen, Alessandro Sette, Bjoern Peters

BMC Bioinform., 2019

2018

The SysteMHC Atlas project.

Wenguang Shao, Patrick G. A. Pedrioli, Witold Wolski, Christian Scurtescu, Emanuel Schmid, Juan Antonio Vizcaíno, Mathieu Courcelles, Heiko Schuster, Daniel Kowalewski, Fabio Marino, Cecilia S. Lindestam Arlehamn, Kerrie Vaughan, Bjoern Peters, Alessandro Sette, Tom H. M. Ottenhoff, Krista E. Meijgaarden, Natalie Nieuwenhuizen, Stefan H. E. Kaufmann, Ralph Schlapbach, John C. Castle, Alexey I. Nesvizhskii, Morten Nielsen, Eric W. Deutsch, David S. Campbell, Robert L. Moritz, Roman A. Zubarev, Anders Jimmy Ytterberg, Anthony W. Purcell, Miguel Marcilla, Alberto Paradela, Qi Wang, Catherine E. Costello, Nicola Ternette, Peter A. van Veelen, Cécile A. C. M. van Els, Albert J. R. Heck, Gustavo A. de Souza, Ludvig Magne Sollid, Arie Admon, Stefan Stevanovic, Hans-Georg Rammensee, Pierre Thibault, Claude Perreault, Michal Bassani-Sternberg, Ruedi Aebersold, Etienne Caron

Nucleic Acids Res., 2018

ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins.

Sandeep Kumar Dhanda, Randi Vita, Brendan Ha, Alba Grifoni, Bjoern Peters, Alessandro Sette

Bioinform., 2018

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.

Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2018

2017

Identifying specificity groups in the T cell receptor repertoire.

Jacob Glanville, Huang Huang, Allison Nau, Olivia Hatton, Lisa E. Wagar, Florian Rubelt, Xuhuai Ji, Arnold Han, Sheri M. Krams, Christina Pettus, Nikhil Haas, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Scott D. Boyd, Thomas J. Scriba, Olivia M. Martinez, Mark M. Davis

Nat., 2017

Better living through ontologies at the Immune Epitope Database.

Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2017

2016

An ontology for major histocompatibility restriction.

Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters

J. Biomed. Semant., 2016

2015

The immune epitope database (IEDB) 3.0.

Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., 2015

Automated benchmarking of peptide-MHC class I binding predictions.

Thomas Trolle, Imir G. Metushi, Jason A. Greenbaum, Yohan Kim, John Sidney, Ole Lund, Alessandro Sette, Bjoern Peters, Morten Nielsen

Bioinform., 2015

2014

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions.

Yohan Kim, John Sidney, Søren Buus, Alessandro Sette, Morten Nielsen, Bjoern Peters

BMC Bioinform., 2014

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.

Sinu Paul, John Sidney, Bjoern Peters, Alessandro Sette

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

The interplay of sequence conservation and T cell immune recognition.

Anne Bresciani, Jason Greenbaum, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Morten Nielsen, Bjoern Peters

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation.

Yohan Kim, Jonathan W. Yewdell, Alessandro Sette, Björn Peters

PLoS Comput. Biol., 2013

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity.

Jorg J. A. Calis, Matt Maybeno, Jason A. Greenbaum, Daniela Weiskopf, Aruna D. De Silva, Alessandro Sette, Can Kesmir, Björn Peters

PLoS Comput. Biol., 2013

Query enhancement through the practical application of ontology: the IEDB and OBI.

Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters

J. Biomed. Semant., 2013

A Taxonomy for Immunologists.

James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012

Immune epitope database analysis resource.

Yohan Kim, Julia V. Ponomarenko, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Bjoern Peters

Nucleic Acids Res., 2012

2011

IEDB-3D: structural data within the immune epitope database.

Julia V. Ponomarenko, Nikitas Papangelopoulos, Dirk M. Zajonc, Björn Peters, Alessandro Sette, Philip E. Bourne

Nucleic Acids Res., 2011

Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation.

Emily Seymour, Rohini Damle, Alessandro Sette, Bjoern Peters

BMC Bioinform., 2011

2010

The Immune Epitope Database 2.0.

Randi Vita, Laura Zarebski, Jason Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Björn Peters

Nucleic Acids Res., 2010

Peptide binding predictions for HLA DR, DP and DQ molecules.

Peng Wang, John Sidney, Yohan Kim, Alessandro Sette, Ole Lund, Morten Nielsen, Björn Peters

BMC Bioinform., 2010

An automatic computational pipeline to display MHC binding motifs.

Peng Wang, Björn Peters, John Sidney, Alessandro Sette

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior.

Yohan Kim, John Sidney, Clemencia Pinilla, Alessandro Sette, Björn Peters

BMC Bioinform., 2009

2008

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach.

Peng Wang, John Sidney, Courtney Dow, Bianca Mothé, Alessandro Sette, Björn Peters

PLoS Comput. Biol., 2008

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan.

Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund

PLoS Comput. Biol., 2008

Immune epitope database analysis resource (IEDB-AR).

Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters

Nucleic Acids Res., 2008

ElliPro: a new structure-based tool for the prediction of antibody epitopes.

Julia V. Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Björn Peters

BMC Bioinform., 2008

2007

Automating document classification for the Immune Epitope Database.

Peng Wang, Alexander A. Morgan, Qing Zhang, Alessandro Sette, Björn Peters

BMC Bioinform., 2007

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.

Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusseder, Alessandro Sette

BMC Bioinform., 2007

2006

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.

Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette

PLoS Comput. Biol., 2006

Curation of complex, context-dependent immunological data.

Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E. Bourne, Julia V. Ponomarenko, Romulo de Castro Jr., Russell K. Chan, John Sidney, Stephen S. Wilson, Scott Stewart, Scott Way, Björn Peters, Alessandro Sette

BMC Bioinform., 2006

Predicting population coverage of T-cell epitope-based diagnostics and vaccines.

Huynh-Hoa Bui, John Sidney, Kenny Dinh, Scott Southwood, Mark J. Newman, Alessandro Sette

BMC Bioinform., 2006

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules.

Shanfeng Zhu, Keiko Udaka, John Sidney, Alessandro Sette, Kiyoko F. Aoki-Kinoshita, Hiroshi Mamitsuka

Bioinform., 2006

The Immune Epitope Database and Analysis Resource.

Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters

Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

2005

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method.

Björn Peters, Alessandro Sette

BMC Bioinform., 2005

2003

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.

Björn Peters, Weiwei Tong, John Sidney, Alessandro Sette, Zhiping Weng

Bioinform., 2003

1989

A BASIC microcomputer program for data analysis of limiting dilution assays.

Alessandro Sette, Luciano Adorini, Camillo Mancini, Gino Doria

Comput. Appl. Biosci., 1989