Ales Krenek

According to our database, Ales Krenek authored at least 27 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications.

Amanda Calatrava, Hernán Asorey, Ján Astalos, Alberto Azevedo, Francesco Benincasa, Ignacio Blanquer, Martin Bobák, Francisco Vilar Brasileiro, Laia Codó, Laura del Cano, Borja Esteban, Meritxell Ferret, Josef Handl, Tobias Kerzenmacher, Valentin Kozlov, Ales Krenek, Ricardo Martins, Manuel Pavesio, Antonio Juan Rubio-Montero, Juan Sánchez-Ferrero

Comput. Sci. Rev., August, 2023

αCharges: partial atomic charges for AlphaFold structures in high quality.

Ondrej Schindler, Karel Berka, Alessio Cantara, Ales Krenek, Dominik Tichý, Tomás Racek, Radka Svobodová Vareková

Nucleic Acids Res., July, 2023

Onedata4Sci: Life science data management solution based on Onedata.

Tomás Svoboda, Tomás Racek, Josef Handl, Jozef Sabo, Adrián Rosinec, Lukasz Opiola, Wojciech Jesionek, Milan Esner, Markéta Pernisová, Natallia Madzia Valasevich, Ales Krenek, Radka Svobodová Vareková

CoRR, 2023

De-novo Identification of Small Molecules from Their GC-EI-MS Spectra.

Adam Hájek, Michal Starý, Filip Jozefov, Helge Hecht, Elliott James Price, Ales Krenek

CoRR, 2023

2022

Property Map Collective Variable as a Useful Tool for a Force Field Correction.

Dalibor Trapl, Martin Krupicka, Vladimír Visnovský, Jana Hozzová, Jaroslav Olha, Ales Krenek, Vojtech Spiwok

J. Chem. Inf. Model., 2022

2021

Similarity Search for an Extreme Application: Experience and Implementation.

Vladimir Mic, Tomás Racek, Ales Krenek, Pavel Zezula

Proceedings of the Similarity Search and Applications - 14th International Conference, 2021

2018

Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations.

Jana Pazúriková, Jaroslav Olha, Ales Krenek, Vojtech Spiwok

CoRR, 2018

2016

NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.

Tomás Racek, Jana Pazúriková, Radka Svobodová Vareková, Stanislav Geidl, Ales Krenek, Francesco L. Falginella, Vladimír Horský, Václav Hejret, Jaroslav Koca

J. Cheminformatics, 2016

2015

High-quality and universal empirical atomic charges for chemoinformatics applications.

Stanislav Geidl, Tomás Bouchal, Tomás Racek, Radka Svobodová Vareková, Václav Hejret, Ales Krenek, Ruben Abagyan, Jaroslav Koca

J. Cheminformatics, 2015

2014

Empirical charges for chemoinformatics applications.

Tomás Bouchal, Radka Svobodová Vareková, Tomás Racek, Crina-Maria Ionescu, Stanislav Geidl, Ales Krenek, Jaroslav Koca

J. Cheminformatics, 2014

2013

Nemesis - a molecular modeling package.

Jakub Stepán, Petr Kulhánek, Milan Lenco, Zora Strelcová, Ales Krenek, Jaroslav Koca

J. Cheminformatics, 2013

2010

Compression of Vector Field Changing in Time.

Tomas Golembiovsky, Ales Krenek

Proceedings of the Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, 2010

2008

Special Issue: The First Provenance Challenge.

Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao

Concurr. Comput. Pract. Exp., 2008

gLite Job Provenance - a job-centric view.

Ales Krenek, Jirí Sitera, Ludek Matyska, Frantisek Dvorák, Milos Mulac, Miroslav Ruda, Zdenek Salvet

Concurr. Comput. Pract. Exp., 2008

Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services.

Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska

Proceedings of the 16th Euromicro International Conference on Parallel, 2008

Job Provenance - Insight into Very Large Provenance Datasets.

Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet

Proceedings of the Provenance and Annotation of Data and Processes, 2008

2007

A uniform job monitoring service in multiple job universes.

Miroslav Ruda, Ales Krenek, Milos Mulac, Jan Pospisil, Zdenek Sustr

Proceedings of the 2007 workshop on Grid monitoring, 2007

2006

gLite Job Provenance.

Frantisek Dvorák, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jan Pospisil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu

Proceedings of the Provenance and Annotation of Data, 2006

2005

Best Practices of User Account Management with Virtual Organization Based Access to Grid.

Jirí Denemark, Michal Jankowski, Ales Krenek, Ludek Matyska, Norbert Meyer, Miroslav Ruda, Pawel Wolniewicz

Proceedings of the Parallel Processing and Applied Mathematics, 2005

Haptically Driven Travelling through Conformational Space.

Igor Peterlík, Ales Krenek

Proceedings of the First Joint Eurohaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, 2005

2004

The DataGrid Workload Management System: Challenges and Results.

Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Alessandro Maraschini, Fabrizio Pacini, Massimo Sottilaro, Annalisa Terracina, D. Colling, Francesco Giacomini, Elisabetta Ronchieri, Alessio Gianelle, Mirco Mazzucato, Rosario Peluso, Massimo Sgaravatto, Andrea Guarise, Rosario M. Piro, Albert Werbrouck, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, J. Skrabal, Michal Vocu, M. Mezzadri, Francesco Prelz, Salvatore Monforte, Marco Pappalardo

J. Grid Comput., 2004

2003

The EU DataGrid Workload Management System: towards the second major release

Giuseppe Avellino, S. Barale, Stefano Beco, Barbara Cantalupo, D. Colling, Francesco Giacomini, Alessio Gianelle, Andrea Guarise, Ales Krenek, Daniel Kouril, Alessandro Maraschini, Ludek Matyska, M. Mezzadri, Salvatore Monforte, Milos Mulac, Fabrizio Pacini, Marco Pappalardo, R. Peluso, Jirí Pospísil, Francesco Prelz, Elisabetta Ronchieri, Miroslav Ruda, Livio Salconi, Zdenek Salvet, Massimo Sgaravatto, Jirí Sitera, Annalisa Terracina, Michal Vocu, Albert Werbrouck

CoRR, 2003

The first deployment of workload management services on the EU DataGrid Testbed: feedback on design and implementation

Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Fabrizio Pacini, Annalisa Terracina, Alessandro Maraschini, D. Colling, Salvatore Monforte, Marco Pappalardo, Livio Salconi, Francesco Giacomini, Elisabetta Ronchieri, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu, M. Mezzadri, Francesco Prelz, Alessio Gianelle, R. Peluso, Massimo Sgaravatto, S. Barale, Andrea Guarise, Albert Werbrouck

CoRR, 2003

Building 3D State Spaces of Virtual Environments with a TDS-Based Algorithm.

Ales Krenek, Igor Peterlík, Ludek Matyska

Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface,10th European PVM/MPI Users' Group Meeting, Venice, Italy, September 29, 2003

Haptic Rendering of Complex Force Fields.

Ales Krenek

Proceedings of the 7th International Workshop on Immersive Projection Technology, 2003

2001

Early Experiences with the EGrid Testbed.

Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell

Proceedings of the First IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2001), 2001

2000

Handling Cycles in Conformational Behaviour Visualization.

Ales Krenek

Proceedings of the 8-th International Conference in Central Europe on Computer Graphics, 2000