Aleksandra A. Galitsyna

According to our database, Aleksandra A. Galitsyna authored at least 13 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Bioframe: operations on genomic intervals in <i>Pandas</i> dataframes.

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev

Bioinform., February, 2024

Pairtools: From sequencing data to chromosome contacts.

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev

PLoS Comput. Biol., 2024

Cooltools: Enabling high-resolution Hi-C analysis in Python.

Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Betul A. Oksuz, Sergey Venev, Yao Xiao

PLoS Comput. Biol., 2024

2023

HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases.

Victoria A Kobets, Sergey V. Ulianov, Aleksandra A. Galitsyna, Semen A. Doronin, Elena A. Mikhaleva, Mikhail S. Gelfand, Yuri Y. Shevelyov, Sergey V. Razin, Ekaterina E. Khrameeva

Briefings Bioinform., March, 2023

2021

Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data.

Pavel I. Kos, Aleksandra A. Galitsyna, Sergey V. Ulianov, Mikhail S. Gelfand, Sergey V. Razin, Alexander V. Chertovich

PLoS Comput. Biol., 2021

Single-cell Hi-C data analysis: safety in numbers.

Aleksandra A. Galitsyna, Mikhail S. Gelfand

Briefings Bioinform., 2021

2020

A machine learning framework for the prediction of chromatin folding in <i>Drosophila</i> using epigenetic features.

Michal Rozenwald, Aleksandra A. Galitsyna, Grigory V. Sapunov, Ekaterina E. Khrameeva, Mikhail S. Gelfand

PeerJ Comput. Sci., 2020

HiChew: a Tool for TAD Clustering in Embryogenesis.

Nikolai S. Bykov, Olga M. Sigalova, Mikhail S. Gelfand, Aleksandra A. Galitsyna

Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

2018

Single-cell Hi-C demonstrates that TADs are stable units of Drosophila genome folding that persist in individual cells.

Vlada S. Zakharova, Aleksandra A. Galitsyna, Kirill E. Polovnikov, Ekaterina E. Khrameeva, Mariya D. Logacheva, Elena A. Mikhaleva, Egor S. Vassetzky, Aleksey A. Gavrilov, Yuri Y. Shevelev, Sergey K. Nechaev, Sergey V. Ulianov, Sergey V. Razin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Nuclear lamina maintains global spatial organization of chromatin in Drosophila cultured cells.

Sergey V. Ulianov, Semen A. Doronin, Ekaterina E. Khrameeva, Pavel I. Kos, Sergey S. Starikov, Aleksandra A. Galitsyna, Artem Luzhin, Mikhail S. Gelfand, Alexander V. Chertovich, Sergey V. Razin, Yuri Y. Shevelyov

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

The chromatin structure of Dictyostelium discoideum.

Olga Tsoy, Aleksandra A. Galitsyna, Ekaterina Khrameeva, Sergey V. Ulianov, Mikhail S. Gelfand, Sergey V. Razin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Reconstruction of the chromatin 3D conformation from single cell Hi-C data.

Pavel I. Kos, Aleksandra A. Galitsyna, Sergey V. Ulianov, Mikhail S. Gelfand, Sergey V. Razin, Alexander V. Chertovich

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Large-scale analysis of RNA-DNA interactions.

Aleksandra A. Galitsyna, Anastasia Zharikova, Maria Logacheva, Sergey V. Razin, Andrey Mironov, Alexey Gavrilov

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018