Aleksandar Poleksic

According to our database, Aleksandar Poleksic authored at least 22 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Fast Dual-Regularized Autoencoder for Sparse Biological Data.

Aleksandar Poleksic

CoRR, 2024

2023

Optimization in Hyperbolic Space - Applications to Drug-Target Interaction Prediction.

Aleksandar Poleksic

Proceedings of the Numerical Computations: Theory and Algorithms, 2023

2022

Overcoming Sparseness of Biomedical Networks to Identify Drug Repositioning Candidates.

Aleksandar Poleksic

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2018

Predicting serious rare adverse reactions of novel chemicals.

Aleksandar Poleksic, Lei Xie

Bioinform., 2018

2017

Mining FDA resources to compute population-specific frequencies of adverse drug reactions.

Aleksandar Poleksic, Carson Turner, Rishabh Dalal, Paul Gray, Lei Xie

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing.

Hansaim Lim, Aleksandar Poleksic, Yuan Yao, Hanghang Tong, Di He, Luke Zhuang, Patrick Meng, Lei Xie

PLoS Comput. Biol., 2016

2015

A polynomial time algorithm for computing the area under a GDT curve.

Aleksandar Poleksic

Algorithms Mol. Biol., 2015

Towards a better measure of protein 3D model quality.

Aleksandar Poleksic

Proceedings of the IEEE International Conference on Electro/Information Technology, 2015

2014

Utilizing twilight zone sequence similarities to increase the accuracy of protein 3D structure comparison.

Aleksandar Poleksic, Paul Gray

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Improved Algorithms for Matching r-Separated Sets with Applications to Protein Structure Alignment.

Aleksandar Poleksic

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012

On Complexity of Protein Structure Alignment Problem under Distance Constraint.

Aleksandar Poleksic

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Visualizing Protein Structural Superpositions and Alignments with StructAlignViewer.

Harald Kattnig, Aleksandar Poleksic

Proceedings of the 16th International Conference on Information Visualisation, 2012

Protein Structure Alignment: Is There Room for Improvement?

Mauricio Arriagada, Aleksandar Poleksic

Proceedings of the Sixth International Conference on Complex, 2012

2011

Optimizing a Widely Used Protein Structure Alignment Measure in Expected Polynomial Time.

Aleksandar Poleksic

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Optimal Pairwise Alignment of Fixed protein Structures in Subquadratic Time.

Aleksandar Poleksic

J. Bioinform. Comput. Biol., 2011

2010

Protein Structure Alignment in Subquadratic Time.

Aleksandar Poleksic

Proceedings of the Bio-Inspired Models of Network, Information, and Computing Systems, 2010

2009

Island method for estimating the statistical significance of profile-profile alignment scores.

Aleksandar Poleksic

BMC Bioinform., 2009

Algorithms for optimal protein structure alignment.

Aleksandar Poleksic

Bioinform., 2009

2008

A Different Look at the Quality of Modeled Three-Dimensional protein Structures.

Aleksandar Poleksic, Mark A. Fienup, Joseph F. Danzer, Derek A. Debe

J. Bioinform. Comput. Biol., 2008

Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.

Aleksandar Poleksic, Mark A. Fienup

Bioinform., 2008

2007

Protein side-chain modeling using a combination of knowledge and energy based approaches.

Aleksandar Poleksic, Joseph F. Danzer

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2005

Convergent Island Statistics: a fast method for determining local alignment score significance.

Aleksandar Poleksic, Joseph F. Danzer, Kevin Hambly, Derek A. Debe

Bioinform., 2005