Akihiko Konagaya
Orcid: 0000-0001-6846-7449
According to our database1,
Akihiko Konagaya
authored at least 94 papers
between 1984 and 2023.
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Bibliography
2023
Co-creation environment with cloud virtual reality and real-time artificial intelligence toward the design of molecular robots.
J. Integr. Bioinform., March, 2023
2022
Utility of constraints reflecting system stability on analyses for biological models.
PLoS Comput. Biol., September, 2022
Neural Comput. Appl., 2022
2019
Predictive Simulation: Using Regression and Artificial Neural Networks to Negate Latency in Networked Interactive Virtual Reality.
CoRR, 2019
Artif. Life Robotics, 2019
2017
Parallel Interaction Detection Algorithms for a Particle-based Live Controlled Real-time Microtubule Gliding Simulation System Accelerated by GPGPU.
New Gener. Comput., 2017
Constraint-based perturbation analysis with cluster Newton method: a case study of personalized parameter estimations with irinotecan whole-body physiologically based pharmacokinetic model.
BMC Syst. Biol., 2017
2016
Int. J. Autom. Comput., 2016
Investigation of the microtubule dynamics with probabilistic data association filter.
Proceedings of the 11th IEEE Annual International Conference on Nano/Micro Engineered and Molecular Systems, 2016
Using a master and slave approach for GPGPU computing to achieve optimal scaling in a 3D real-time simulation.
Proceedings of the 11th IEEE Annual International Conference on Nano/Micro Engineered and Molecular Systems, 2016
2015
New Gener. Comput., 2015
J. Comput. Appl. Math., 2015
2014
Cluster Newton Method for Sampling Multiple Solutions of Underdetermined Inverse Problems: Application to a Parameter Identification Problem in Pharmacokinetics.
SIAM J. Sci. Comput., 2014
Implementing a modeling software for animated protein-complex interactions using a physics simulation library.
J. Bioinform. Comput. Biol., 2014
Proceedings of the 4th International Conference on Image Processing Theory, 2014
2013
Estimation of feasible solution space using Cluster Newton Method: application to pharmacokinetic analysis of irinotecan with physiologically-based pharmacokinetic models.
BMC Syst. Biol., 2013
2008
Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid.
IEEE Trans. Inf. Technol. Biomed., 2008
Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation.
BMC Bioinform., 2008
2007
Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation.
J. VLSI Signal Process., 2007
Discovering Dynamic Characteristics of Biochemical Pathways using Geometric Patterns among Parameter-Parameter Dependencies in Differential Equations.
New Gener. Comput., 2007
IEICE Trans. Inf. Syst., 2007
Proceedings of the Proceeding of the Second International Multi-Symposium of Computer and Computational Sciences (IMSCCS 2007), 2007
High speed tablation system using an FPGA designed for distribution tables of frequent DNA subsequences.
Proceedings of the FPL 2007, 2007
An FPGA Implementation of Multiple Sequence Alignment Based on Carrillo-Lipman Method.
Proceedings of the FPL 2007, 2007
RABC: A Conceptual Design of Pervasive Infrastructure for Browser Computing based on Ajax technologies.
Proceedings of the Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007), 2007
Kinetic Analysis of Ligand-Receptor Complex Formation with the Aid of Computer Simulation.
Proceedings of the 21st International Conference on Advanced Information Networking and Applications (AINA 2007), 2007
Seeing Is Knowing: Visualization of Parameter-Parameter Dependencies in Biomedical Network Models.
Proceedings of the Grid Computing for Bioinformatics and Computational Biology, 2007
2006
Selecting effective siRNA sequences based on the self-organizing map and statistical techniques.
Comput. Biol. Chem., 2006
Selecting effective siRNA sequences by using radial basis function network and decision tree learning.
BMC Bioinform., 2006
BMC Bioinform., 2006
Particle simulation approach for subcellular dynamics and interactions of biological molecules.
BMC Bioinform., 2006
Particle Simulation Approach for Sub-cellular Dynamics and Interactions of Biological Molecules.
Proceedings of the Interdisciplinary and Multidisciplinary Research in Computer Science, 2006
Proceedings of the Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28, 2006
Proceedings of the Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28, 2006
Improving the Research Environment of High Performance Computing for Non-cluster Experts Based on Knoppix Instant Computing Technology.
Proceedings of the Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference, Dresden, Germany, August 28, 2006
OBIGrid: Towards the 'Ba' for Sharing Resources, Services and Knowledge for Bioinformatics.
Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 2006
Proceedings of the Algebra, Meaning, and Computation, 2006
2005
RARGE: a large-scale database of RIKEN <i>Arabidopsis</i> resources ranging from transcriptome to phenome.
Nucleic Acids Res., 2005
Three-dimensional Definition of Leaf Morphological Traits of <i>arabidopsis in Silico</i> Phenotypic Analysis.
J. Bioinform. Comput. Biol., 2005
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.
Bioinform., 2005
Software-Aided Mass Spectrometry Analysis for Identification of Protein-Protein Interaction in Signal Transduction Pathways.
Proceedings of the 21st International Conference on Data Engineering Workshops, 2005
Spatiotemporal Simulation of a Single Living Cell.
Proceedings of the 2005 IEEE International Conference on Field-Programmable Technology, 2005
Proceedings of the 2005 International Conference on Field Programmable Logic and Applications (FPL), 2005
2004
Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that will Drive Future Science.
New Gener. Comput., 2004
J. Biomed. Informatics, 2004
Bioinform., 2004
Bioinform., 2004
Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2004
Proceedings of the MEDINFO 2004, 2004
Proceedings of the Grid Computing in Life Science, 2004
Proceedings of the Grid Computing in Life Science, 2004
Proceedings of the Grid Computing in Life Science, 2004
PBIE: A Data Preparation Toolkit Toward Developing a Parsing-Based Information Extraction System.
Proceedings of the Fourth International Conference on Language Resources and Evaluation, 2004
TraitMap: an XML-based genetic-map database combining multigenic loci and biomolecular networks.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
Proceedings of the Field Programmable Logic and Application, 2004
2003
GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs.
Bioinform., 2003
KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data.
Bioinform., 2003
High dimensional function optimization using a new genetic local search suitable for parallel computers.
Proceedings of the IEEE International Conference on Systems, 2003
Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.
Proceedings of the ACM/IEEE SC2003 Conference on High Performance Networking and Computing, 2003
MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.
Proceedings of the Parallel Computing: Software Technology, 2003
DIO: Drug Interaction Ontology - Application to Inferences in Possible Drug-Drug Interactions.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2003
Development of Support Tool for NMR Spectrum Analysis.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2003
Prediction of Protein-Protein Interaction Sites Using Support Vector Machines.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2003
Effect of utilizing terminology on extraction of protein-protein interaction information from biomedical literature.
Proceedings of the EACL 2003, 2003
Proceedings of the IEEE Congress on Evolutionary Computation, 2003
Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003
2002
Proceedings of the 21st Symposium on Reliable Distributed Systems (SRDS 2002), 2002
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
Circle formation for oblivious anonymous mobile robots with no common sense of orientation.
Proceedings of the 2002 Workshop on Principles of Mobile Computing, 2002
Proceedings of the Field-Programmable Logic and Applications, 2002
1995
IEEE J. Solid State Circuits, April, 1995
A combination of a functional motif model and a structural motif model for a database validation.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995
Proceedings of the IFIP WG10.3 working conference on Parallel architectures and compilation techniques, 1995
1994
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994
1993
Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities.
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993
A Fine-Grained Parallel Genetic Algorithm for Distributed Parallel Systems.
Proceedings of the 5th International Conference on Genetic Algorithms, 1993
1992
An Asynchronous Fine-Grained Parallel Genetic Algorithm.
Proceedings of the Parallel Problem Solving from Nature 2, 1992
Implementing Streams on Parallel Machines with Distributed Memory.
Proceedings of the International Conference on Fifth Generation Computer Systems. FGCS 1992, 1992
Proceedings of the Algorithmic Learning Theory, Third Workshop, 1992
1991
Proceedings of the Eighth International Workshop (ML91), 1991
1990
Implementation and Evaluation of Dynamic Predicates on the Sequential Inference Machine CHI.
Proceedings of the 1990 Internation Conference on Computer Languages, 1990
1989
Performance Evaluation of a Sequential Inference Machine CHI.
Proceedings of the Logic Programming, 1989
1988
Knowledge Base System in Logic Programming Paradigm.
Proceedings of the International Conference on Fifth Generation Computer Systems, 1988
1987
A Co-Operative Programming Environment for a Back-End Type Sequential Inference Machine CHI.
Proceedings of the Parallel Algorithms and Architectures, 1987
1985
Proceedings of the 12th Annual Symposium on Computer Architecture, 1985
1984
Proceedings of the RIMS Symposia on Software Science and Engineering II, 1984