Ahmet Ay

According to our database, Ahmet Ay authored at least 14 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Pattern Discovery in Multilayer Networks.

Yuanfang Ren, Aisharjya Sarkar, Pierangelo Veltri, Ahmet Ay, Alin Dobra, Tamer Kahveci

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2021

ANCA: Alignment-Based Network Construction Algorithm.

Kevin Chow, Aisharjya Sarkar, Rasha Elhesha, Pietro Cinaglia, Ahmet Ay, Tamer Kahveci

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

2019

Characterizing building blocks of resource constrained biological networks.

Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci

BMC Bioinform., 2019

Finding Conserved Patterns in Multilayer Networks.

Yuanfang Ren, Aisharjya Sarkar, Ahmet Ay, Alin Dobra, Tamer Kahveci

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks.

Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Identification of jointly correlated gene sets.

Yuanfang Ren, Ahmet Ay, Travis A. Gerke, Tamer Kahveci

J. Bioinform. Comput. Biol., 2018

Shortest path counting in probabilistic biological networks.

Yuanfang Ren, Ahmet Ay, Tamer Kahveci

BMC Bioinform., 2018

ANCA: Alignment-based Network Construction Algorithm.

Kevin Chow, Ahmet Ay, Rasha Elhesha, Tamer Kahveci

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach.

Necmettin Yildirim, Mehmet Emin Aktas, Seyma Nur Ozcan, Esra Akbas, Ahmet Ay

Silico Biol., 2017

2016

Identifying the topology of signaling networks from partial RNAi data.

Yuanfang Ren, Qiyao Wang, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci

BMC Syst. Biol., 2016

2015

Hierarchical decomposition of dynamically evolving regulatory networks.

Ahmet Ay, Dihong Gong, Tamer Kahveci

BMC Bioinform., 2015

Construction of signaling networks with incomplete RNAi data.

Qiyao Wang, Yuanfang Ren, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Multiple reference networks improve accuracy of signaling network construction.

Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2010

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects.

Jacqueline M. Dresch, Xiaozhou Liu, David N. Arnosti, Ahmet Ay

BMC Syst. Biol., 2010