Aedín C. Culhane

According to our database, Aedín C. Culhane authored at least 22 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Learning and teaching biological data science in the Bioconductor community.

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva, Robert Castelo, Aedín C. Culhane, Sean Davis, Maria A. Doyle, Susan Holmes, Leo Lahti, Alexandru Mahmoud, Kozo Nishida, Marcel Ramos, Kevin C. Rue-Albrecht, David J. H. Shih, Laurent Gatto, Charlotte Soneson

CoRR, 2024

2023

Curated single cell multimodal landmark datasets for R/Bioconductor.

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron

PLoS Comput. Biol., 2023

2016

Dimension reduction techniques for the integrative analysis of multi-omics data.

Chen Meng, Oana A. Zeleznik, Gerhard G. Thallinger, Bernhard Küster, Amin Moghaddas Gholami, Aedín C. Culhane

Briefings Bioinform., 2016

Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron

Briefings Bioinform., 2016

Integrative Exploratory Analysis of Two or More Genomic Datasets.

Chen Meng, Aedín C. Culhane

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2014

A multivariate approach to the integration of multi-omics datasets.

Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami

BMC Bioinform., 2014

2013

Significance Analysis of Prognostic Signatures.

Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schröder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains

PLoS Comput. Biol., 2013

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface.

Markus S. Schröder, Daniel Gusenleitner, John Quackenbush, Aedín C. Culhane, Benjamin Haibe-Kains

Bioinform., 2013

2012

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.

Shannan J. Ho Sui, Kimberly Begley, Dorothy Reilly, Brad Chapman, Ray McGovern, Philippe Rocca-Serra, Eamonn Maguire, Gabriel M. Altschuler, Terah A. A. Hansen, Ramakrishna Sompallae, Andrei Krivtsov, Ramesh A. Shivdasani, Scott A. Armstrong, Aedín C. Culhane, Mick Correll, Susanna-Assunta Sansone, Oliver Hofmann, Winston Hide

Nucleic Acids Res., 2012

Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments.

Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedín C. Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey Zorin, Helen E. Parkinson, Alvis Brazma

Nucleic Acids Res., 2012

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.

Aedín C. Culhane, Markus S. Schröder, Razvan Sultana, Shaita C. Picard, Enzo N. Martinelli, Caroline Kelly, Benjamin Haibe-Kains, Misha Kapushesky, Anne-Alyssa St Pierre, William Flahive, Kermshlise C. Picard, Daniel Gusenleitner, Gerald Papenhausen, Niall O'Connor, Mick Correll, John Quackenbush

Nucleic Acids Res., 2012

iBBiG: iterative binary bi-clustering of gene sets.

Daniel Gusenleitner, Eleanor Howe, Stefan Bentink, John Quackenbush, Aedín C. Culhane

Bioinform., 2012

2011

<i>survcomp</i>: an R/Bioconductor package for performance assessment and comparison of survival models.

Markus S. Schröder, Aedín C. Culhane, John Quackenbush, Benjamin Haibe-Kains

Bioinform., 2011

2010

GeneSigDB - a curated database of gene expression signatures.

Aedín C. Culhane, Thomas Schwarzl, Razvan Sultana, Kermshlise C. Picard, Shaita C. Picard, Tim H. Lu, Katherine R. Franklin, Simon J. French, Gerald Papenhausen, Mick Correll, John Quackenbush

Nucleic Acids Res., 2010

2009

AI Methods for Analyzing Microarray Data.

Amira Djebbari, Aedín C. Culhane, Alice Armstrong, John Quackenbush

Proceedings of the Encyclopedia of Artificial Intelligence (3 Volumes), 2009

2007

Integrating transcription factor binding site information with gene expression datasets.

Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins

Bioinform., 2007

2006

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane

BMC Bioinform., 2006

2005

Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data.

Florent Baty, Michel P. Bihl, Guy Perrière, Aedín C. Culhane, Martin H. Brutsche

BMC Bioinform., 2005

MADE4: an R package for multivariate analysis of gene expression data.

Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins

Bioinform., 2005

2004

Expression Profiler: next generation - an online platform for analysis of microarray data.

Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma

Nucleic Acids Res., 2004

2003

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Aedín C. Culhane, Guy Perrière, Desmond G. Higgins

BMC Bioinform., 2003

2002

Between-group analysis of microarray data.

Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins

Bioinform., 2002