Adrien Coulet

According to our database, Adrien Coulet authored at least 53 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia.

Elisa Castagnari, Lillian Muyama, Adrien Coulet

CoRR, 2024

Facilitating phenotyping from clinical texts: the medkit library.

Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet

CoRR, 2024

Deep Reinforcement Learning for personalized diagnostic decision pathways using Electronic Health Records: A comparative study on anemia and Systemic Lupus Erythematosus.

Lillian Muyama, Antoine Neuraz, Adrien Coulet

Artif. Intell. Medicine, 2024

Comparing NER Approaches on French Clinical Text, with Easy-to-Reuse Pipelines.

Thibault Hubert, Ghislain Vaillant, Olivier Birot, Camila Arias, Antoine Neuraz, Adrien Coulet

Proceedings of the Digital Health and Informatics Innovations for Sustainable Health Care Systems, 2024

2023

Extracting Diagnosis Pathways from Electronic Health Records Using Deep Reinforcement Learning.

Lillian Muyama, Antoine Neuraz, Adrien Coulet

CoRR, 2023

Results of the Ontology Alignment Evaluation Initiative 2023.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: A Case Study on French EHRs.

Thibaut Fabacher, Erik-André Sauleau, Noémie Leclerc Du Sablon, Hugo Bergier, Jacques-Eric Gottenberg, Adrien Coulet, Aurélie Névéol

Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

TAXN: Translate Align Extract Normalize, a Multilingual Extraction Tool for Clinical Texts.

Antoine Neuraz, Ivan Lerner, Olivier Birot, Camila Arias, Larry Han, Clara-Lea Bonzel, Tianxi Cai, Kim Tâm Huynh, Adrien Coulet

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022

Discovering alignment relations with Graph Convolutional Networks: A biomedical case study.

Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet

Semantic Web, 2022

Matching pharmacogenomic knowledge: particularities, results, and perspectives.

Pierre Monnin, Adrien Coulet

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

Exploring Analogical Inference in Healthcare.

Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet

Proceedings of the Workshop on the Interactions between Analogical Reasoning and Machine Learning (International Joint Conference on Artificial Intelligence, 2022

An analogy based framework for patient-stay identification in healthcare.

Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet

Proceedings of the Workshop Proceedings of the 30th International Conferece on Case-Based Reasoning co-located with the 30th International Conference on Case-Based Reasoning (ICCBR 2022), 2022

2021

Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining.

Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet

BMC Medical Informatics Decis. Mak., 2021

Syntax-based transfer learning for the task of biomedical relation extraction.

Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet

J. Biomed. Semant., 2021

Using an Ontological Representation of Chemotherapy Toxicities for Guiding Information Extraction and Integration from EHRs.

Alice Rogier, Adrien Coulet, Bastien Rance

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicales.

Walid Hafiane, Joël Legrand, Yannick Toussaint, Adrien Coulet

Proceedings of the Extraction et Gestion des Connaissances, 2021

2020

Investigating ADR mechanisms with knowledge graph mining and explainable AI.

Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Élie Calvier, Ndeye Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet

CoRR, 2020

Experiments on transfer learning architectures for biomedical relation extraction.

Walid Hafiane, Joël Legrand, Yannick Toussaint, Adrien Coulet

CoRR, 2020

Rediscovering alignment relations with Graph Convolutional Networks.

Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet

CoRR, 2020

Knowledge Reconciliation of n-ary Relations.

Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet

CoRR, 2020

Knowledge-Based Matching of n-ary Tuples.

Pierre Monnin, Miguel Couceiro, Amedeo Napoli, Adrien Coulet

Proceedings of the Ontologies and Concepts in Mind and Machine, 2020

Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study.

Pierre Monnin, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet

Proceedings of the First International Conference "Algebras, graphs and ordered sets", 2020

2019

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison.

Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet

BMC Bioinform., 2019

Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results.

Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet

Proceedings of the Workshop on Deep Learning for Knowledge Graphs (DL4KG2019) Co-located with the 16th Extended Semantic Web Conference 2019 (ESWC 2019), 2019

Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk.

Stephen Pfohl, Ben J. Marafino, Adrien Coulet, Fátima Rodriguez, Latha Palaniappan, Nigam H. Shah

Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, 2019

Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicales. (Mappings between data, texts and knowledge for biomedical knowledge discovery).

Adrien Coulet

, 2019

2018

Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach.

Gabin Personeni, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Philippe Jonveaux, Céline Bonnet, Adrien Coulet

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping.

Pierre Monnin, Amedeo Napoli, Adrien Coulet

Proceedings of the 6th International Workshop "What can FCA do for Artificial Intelligence"? co-located with International Joint Conference on Artificial Intelligence and European Conference on Artificial Intelligence (IJCAI/ECAI 2018), 2018

2017

PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units.

Pierre Monnin, Clément Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet

PeerJ Prepr., 2017

Discovering associations between adverse drug events using pattern structures and ontologies.

Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet

J. Biomed. Semant., 2017

Learning from biomedical linked data to suggest valid pharmacogenes.

Kevin Dalleau, Yassine Marzougui, Sébastien Da Silva, Patrice Ringot, Ndeye Coumba Ndiaye, Adrien Coulet

J. Biomed. Semant., 2017

Using Formal Concept Analysis for Checking the Structure of an Ontology in LOD: The Example of DBpedia.

Pierre Monnin, Mario Lezoche, Amedeo Napoli, Adrien Coulet

Proceedings of the Foundations of Intelligent Systems - 23rd International Symposium, 2017

2016

Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics.

Adrien Coulet, Malika Smaïl-Tabbone

ERCIM News, 2016

2015

Suggesting Valid Pharmacogenes by Mining Linked Data.

Kevin Dalleau, Ndeye Coumba Ndiaye, Adrien Coulet

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs.

Mohsen Hassan, Olfa Makkaoui, Adrien Coulet, Yannick Toussaint

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

2014

Learning Subgraph Patterns from text for Extracting Disease - Symptom Relationships.

Mohsen Hassan, Adrien Coulet, Yannick Toussaint

Proceedings of the 1st International Workshop on Interactions between Data Mining and Natural Language Processing co-located with The European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, 2014

Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability.

Gabin Personeni, Simon Daget, Céline Bonnet, Philippe Jonveaux, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Adrien Coulet

Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

2013

Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data.

Adrien Coulet, Florent Domenach, Mehdi Kaytoue, Amedeo Napoli

Proceedings of the Formal Concept Analysis, 2013

Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology.

Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone

Proceedings of the International Workshop on Data Mining on Linked Data, 2013

2012

The state of the art in text mining and natural language processing for pharmacogenomics.

Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman

J. Biomed. Informatics, 2012

Using ontology-based annotation to profile disease research.

Yi Liu, Adrien Coulet, Paea LePendu, Nigam H. Shah

J. Am. Medical Informatics Assoc., 2012

Formal Concept Analysis Applied to Transcriptomic Data.

Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone

Proceedings of the International Workshop "What can FCA do for Artificial Intelligence?", 2012

2011

NCBO Resource Index: Ontology-based search and mining of biomedical resources.

Clément Jonquet, Paea LePendu, Sean M. Falconer, Adrien Coulet, Natalya Fridman Noy, Mark A. Musen, Nigam H. Shah

J. Web Semant., 2011

Integration and publication of heterogeneous text-mined relationships on the Semantic Web.

Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah

J. Biomed. Semant., 2011

2010

Using text to build semantic networks for pharmacogenomics.

Adrien Coulet, Nigam H. Shah, Yael Garten, Mark A. Musen, Russ B. Altman

J. Biomed. Informatics, 2010

Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application.

Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical.

Clément Jonquet, Adrien Coulet, Nigam H. Shah, Mark A. Musen

Proceedings of the IC 2010 : 21es Journées Ingénierie des Connaissances 2010 (Proceedings of the 21st French Knowledge Engineering Conference), 2010

2008

Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissances. (Construction and use of a pharmacogenomic knowledge base for data integration and knowledge discovery).

Adrien Coulet

PhD thesis, 2008

Ontology-guided data preparation for discovering genotype-phenotype relationships.

Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes

BMC Bioinform., 2008

Role Assertion Analysis: a proposed method for ontology refinement through assertion learning.

Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes

Proceedings of the STAIRS 2008, 2008

Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics.

Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes

Proceedings of the 21st International Workshop on Description Logics (DL2008), 2008

2006

Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing.

Adrien Coulet, Malika Smaïl-Tabbone, Amedeo Napoli, Marie-Dominique Devignes

Proceedings of the On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops, 2006

SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies.

Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes

Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006