Achim Zielesny

Orcid: 0000-0003-0722-4229

According to our database1, Achim Zielesny authored at least 32 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2024
Advancements in hand-drawn chemical structure recognition through an enhanced DECIMER architecture.
J. Cheminformatics, December, 2024

An automated calculation pipeline for differential pair interaction energies with molecular force fields using the Tinker Molecular Modeling Package.
J. Cheminformatics, December, 2024

2023
Notes on molecular fragmentation and parameter settings for a dissipative particle dynamics study of a C<sub>10</sub>E<sub>4</sub>/water mixture with lamellar bilayer formation.
J. Cheminformatics, December, 2023

MORTAR: a rich client application for in silico molecule fragmentation.
J. Cheminformatics, 2023

2022
Scaffold Generator: a Java library implementing molecular scaffold functionalities in the Chemistry Development Kit (CDK).
J. Cheminformatics, 2022

DECIMER - hand-drawn molecule images dataset.
J. Cheminformatics, 2022

RanDepict: Random chemical structure depiction generator.
J. Cheminformatics, 2022

2021
Quantitative Estimation of Cyclotide-Induced Bilayer Membrane Disruption by Lipid Extraction with Mesoscopic Simulation.
J. Chem. Inf. Model., 2021

DECIMER 1.0: deep learning for chemical image recognition using transformers.
J. Cheminformatics, 2021

STOUT: SMILES to IUPAC names using neural machine translation.
J. Cheminformatics, 2021

Molecule Set Comparator (MSC): a CDK-based open rich-client tool for molecule set similarity evaluations.
J. Cheminformatics, 2021

DECIMER-Segmentation: Automated extraction of chemical structure depictions from scientific literature.
J. Cheminformatics, 2021

2020
Too sweet: cheminformatics for deglycosylation in natural products.
J. Cheminformatics, 2020

DECIMER: towards deep learning for chemical image recognition.
J. Cheminformatics, 2020

A review of optical chemical structure recognition tools.
J. Cheminformatics, 2020

MFsim - an open Java all-in-one rich-client simulation environment for mesoscopic simulation.
J. Cheminformatics, 2020

2019
ErtlFunctionalGroupsFinder: automated rule-based functional group detection with the Chemistry Development Kit (CDK).
J. Cheminformatics, 2019

2018
Jdpd: an open java simulation kernel for molecular fragment dissipative particle dynamics.
J. Cheminformatics, 2018

SPICES: a particle-based molecular structure line notation and support library for mesoscopic simulation.
J. Cheminformatics, 2018

2016
From Curve Fitting to Machine Learning - An Illustrative Guide to Scientific Data Analysis and Computational Intelligence, Second Edition
Intelligent Systems Reference Library 109, Springer, ISBN: 978-3-319-32545-3, 2016

2015
Mesoscopic Simulation of Phospholipid Membranes, Peptides, and Proteins with Molecular Fragment Dynamics.
J. Chem. Inf. Model., 2015

2014
Molecular fragment dynamics study on the water-air interface behavior of non-ionic polyoxyethylene alkyl ether surfactants.
J. Cheminformatics, 2014

A molecular fragment cheminformatics roadmap for mesoscopic simulation.
J. Cheminformatics, 2014

2013
Molecular simulations of peptides and proteins with Molecular Fragment Dynamics (MFD).
J. Cheminformatics, 2013

2012
Adsorption of amino acids on MFI-type zeolite: DFT calculations and experimental results.
J. Cheminformatics, 2012

2011
From Curve Fitting to Machine Learning - An Illustrative Guide to Scientific Data Analysis and Computational Intelligence
Intelligent Systems Reference Library 18, Springer, ISBN: 978-3-642-21279-6, 2011

CDK-Taverna 2.0: migration and enhancements of an open-source pipelining solution.
J. Cheminformatics, 2011

New developments on the cheminformatics open workflow environment CDK-Taverna.
J. Cheminformatics, 2011

2010
Molecular fragments chemoinformatics.
J. Cheminformatics, 2010

CDK-Taverna: an open workflow environment for cheminformatics.
BMC Bioinform., 2010

2005
Chemistry Software Package ChemOffice Ultra 2005.
J. Chem. Inf. Model., 2005

2003
Iterative Rank based Methods for Clustering.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003


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