Achim Tresch

According to our database, Achim Tresch authored at least 23 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Nuclear export is a limiting factor in eukaryotic mRNA metabolism.

Jason M. Müller, Katharina Moos, Till Baar, Kerstin C. Maier, Kristina Zumer, Achim Tresch

PLoS Comput. Biol., 2024

2019

Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging.

Henrik Failmezger, Ezgi Dursun, Sebastian Dümcke, Max Endele, Don Poron, Timm Schroeder, Anne Krug, Achim Tresch

Bioinform., 2019

2017

GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis.

Georg Stricker, Alexander Engelhardt, Daniel Schulz, Matthias Schmid, Achim Tresch, Julien Gagneur

Bioinform., 2017

2015

Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions.

Theresa Niederberger, Henrik Failmezger, Diana Uskat, Don Poron, Ingmar Glauche, Nico Scherf, Ingo Roeder, Timm Schroeder, Achim Tresch

Bioinform., 2015

2014

Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction.

Sebastian Dümcke, Johannes Bräuer, Benedict Anchang, Rainer Spang, Niko Beerenwinkel, Achim Tresch

Bioinform., 2014

Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data.

Kemal Akman, Thomas Haaf, Silvia Gravina, Jan Vijg, Achim Tresch

Bioinform., 2014

2013

Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images.

Henrik Failmezger, Benjamin Jaegle, Andrea Schrader, Martin Hülskamp, Achim Tresch

PLoS Comput. Biol., 2013

Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.

Henrik Failmezger, Holger Fröhlich, Achim Tresch

BMC Bioinform., 2013

Learning gene network structure from time laps cell imaging in RNAi Knock downs.

Henrik Failmezger, Paurush Praveen, Achim Tresch, Holger Fröhlich

Bioinform., 2013

2012

MC EMiNEM Maps the Interaction Landscape of the Mediator.

Theresa Niederberger, Stefanie Etzold, Michael Lidschreiber, Kerstin C. Maier, Dietmar E. Martin, Holger Fröhlich, Patrick Cramer, Achim Tresch

PLoS Comput. Biol., 2012

Automatic post-picking using MAPPOS improves particle image detection from Cryo-EM micrographs

Ramin Norousi, Stephan Wickles, Christoph Leidig, Thomas Becker, Volker J. Schmid, Roland Beckmann, Achim Tresch

CoRR, 2012

Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data.

Benedikt Zacher, Khalid Abnaof, Stephan Gade, Erfan Younesi, Achim Tresch, Holger Fröhlich

Bioinform., 2012

Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).

Björn Schwalb, Daniel Schulz, Mai Sun, Benedikt Zacher, Sebastian Dümcke, Dietmar E. Martin, Patrick Cramer, Achim Tresch

Bioinform., 2012

2011

Automatic post-picking improves particle image detection from Cryo-EM micrographs

Ramin Norousi, Stephan Wickles, Thomas Becker, Roland Beckmann, Volker J. Schmid, Achim Tresch

CoRR, 2011

Selective Phenotyping, Entropy Reduction and the Mastermind Game.

Julien Gagneur, Markus C. Elze, Achim Tresch

BMC Bioinform., 2011

Fast and efficient dynamic nested effects models.

Holger Fröhlich, Paurush Praveen, Achim Tresch

Bioinform., 2011

2010

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.

Benedikt Zacher, Pei Fen Kuan, Achim Tresch

BMC Bioinform., 2010

QuantProReloaded: quantitative analysis of microspot immunoassays.

Anika Jöcker, Johanna Sonntag, Frauke Henjes, Frank Götschel, Achim Tresch, Tim Beißbarth, Stefan Wiemann, Ulrike Korf

Bioinform., 2010

2009

A Bayesian Network View on Nested Effects Models.

Cordula Zeller, Holger Fröhlich, Achim Tresch

EURASIP J. Bioinform. Syst. Biol., 2009

Classification across gene expression microarray studies.

Andreas Buness, Markus Ruschhaupt, Ruprecht Kuner, Achim Tresch

BMC Bioinform., 2009

2008

Analyzing gene perturbation screens with nested effects models in R and bioconductor.

Holger Fröhlich, Tim Beißbarth, Achim Tresch, Dennis Kostka, Juby Jacob, Rainer Spang, Florian Markowetz

Bioinform., 2008

2007

Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects.

Achim Tresch, Tim Beißbarth, Holger Sültmann, Ruprecht Kuner, Annemarie Poustka, Andreas Buness

J. Comput. Biol., 2007

Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer.

Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sültmann, Achim Tresch

Bioinform., 2007