Abdullah N. Arslan

According to our database, Abdullah N. Arslan authored at least 41 papers between 1999 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

RNA Secondary Structure Database, Analysis Tool-Set, and Case-Study Results on SARS-CoV-2.

Abdullah N. Arslan, Mutlu Mete, Anjali Kumari

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2018

A fast algorithm for all-pairs Hamming distances.

Abdullah N. Arslan

Inf. Process. Lett., 2018

RNA secondary structure graphical rendering library.

Keith A. Monschke, Abdullah N. Arslan

Proceedings of the 2018 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2018

Dynamic and Fractional Programming Based Approximation Algorithms for Sequence Alignment with Constraints.

Abdullah N. Arslan, Ömer Egecioglu

Proceedings of the Handbook of Approximation Algorithms and Metaheuristics, 2018

2017

Efficient RNA structure comparison algorithms.

Abdullah N. Arslan, Jithendar Anandan, Eric Fry, Keith Monschke, Nitin Ganneboina, Jason Bowerman

J. Bioinform. Comput. Biol., 2017

Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change Points.

Abdullah N. Arslan, Nikolay Metodiev Sirakov

Proceedings of the Combinatorial Image Analysis - 18th International Workshop, 2017

2015

Pattern matching with wildcards and length constraints using maximum network flow.

Abdullah N. Arslan, Dan He, Yu He, Xindong Wu

J. Discrete Algorithms, 2015

Fast Algorithms for Local Similarity Queries in Two Sequences.

Abdullah N. Arslan

Int. J. Found. Comput. Sci., 2015

New algorithms for pattern matching with wildcards and length constraints.

Abdullah N. Arslan, Betsy George, Kirsten Stor

Discret. Math. Algorithms Appl., 2015

2013

PMBC: Pattern mining from biological sequences with wildcard constraints.

Xindong Wu, Xingquan Zhu, Yu He, Abdullah N. Arslan

Comput. Biol. Medicine, 2013

2012

Weapon ontology annotation using boundary describing sequences.

Abdullah N. Arslan, Nikolay Metodiev Sirakov, Salvatore Attardo

Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation, 2012

2010

A Fast Longest Common Subsequence Algorithm for Similar Strings.

Abdullah N. Arslan

Proceedings of the Language and Automata Theory and Applications, 2010

An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and Columns.

Abdullah N. Arslan, Arvind Chidri

Proceedings of the 2010 International Conference on Scientific Computing, 2010

2009

Guided Sequence Alignment.

Abdullah N. Arslan

Proceedings of the Encyclopedia of Data Warehousing and Mining, Second Edition (4 Volumes), 2009

2008

An algorithm with linear expected running time for string editing with substitutions and substring reversals.

Abdullah N. Arslan

Inf. Process. Lett., 2008

2007

Dynamic and Fractional Programming-Based Approximation Algorithms for Sequence Alignment with Constraints.

Ömer Egecioglu, Abdullah N. Arslan

Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007

Regular expression constrained sequence alignment.

Abdullah N. Arslan

J. Discrete Algorithms, 2007

Mining Frequent Patterns with Wildcards from Biological Sequences.

Yu He, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan

Proceedings of the IEEE International Conference on Information Reuse and Integration, 2007

A Largest Common d-Dimensional Subsequence of Two d-Dimensional Strings.

Abdullah N. Arslan

Proceedings of the Fundamentals of Computation Theory, 16th International Symposium, 2007

Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching.

Dan He, Abdullah N. Arslan, Yu He, Xindong Wu

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Phylogeny By Top Down Clustering Using a Given Multiple Alignment.

Abdullah N. Arslan, Peyman Bizargity

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

Efficient string matching with wildcards and length constraints.

Gong Chen, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan, Yu He

Knowl. Inf. Syst., 2006

A Fast Algorithm for the Constrained Multiple Sequence Alignment Problem.

Dan He, Abdullah N. Arslan, Alan C. H. Ling

Acta Cybern., 2006

Efficient Approximate Dictionary Look-Up for Long Words over Small Alphabets.

Abdullah N. Arslan

Proceedings of the LATIN 2006: Theoretical Informatics, 2006

A* Algorithms for the Constrained Multiple Sequence Alignment Problem.

Dan He, Abdullah N. Arslan

Proceedings of the 2006 International Conference on Artificial Intelligence, 2006

FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.

Dan He, Abdullah N. Arslan

Proceedings of the 2006 International Conference on Foundations of Computer Science, 2006

Fast Motif Search in Protein Sequence Databases.

Elena Zheleva, Abdullah N. Arslan

Proceedings of the Computer Science, 2006

Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem.

Dan He, Abdullah N. Arslan

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

An improved algorithm for the regular expression constrained multiple sequence alignment problem.

Abdullah N. Arslan, Dan He

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

An algorithm for string edit distance allowing substring reversals.

Abdullah N. Arslan

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005

Algorithms For The Constrained Longest Common Subsequence Problems.

Abdullah N. Arslan, Ömer Egecioglu

Int. J. Found. Comput. Sci., 2005

Multiple Sequence Alignment Containing a Sequence of Regular Expressions.

Abdullah N. Arslan

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.

Dan He, Abdullah N. Arslan

Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004

Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints.

Abdullah N. Arslan, Ömer Egecioglu

INFORMS J. Comput., 2004

Dictionary Look-Up Within Small Edit Distance.

Abdullah N. Arslan, Ömer Egecioglu

Int. J. Found. Comput. Sci., 2004

2002

Approximation Algorithms for Local Alignment with Length Constraints.

Abdullah N. Arslan, Ömer Egecioglu

Int. J. Found. Comput. Sci., 2002

Efficient Computation of Long Similar Subsequences.

Abdullah N. Arslan, Ömer Egecioglu

Proceedings of the String Processing and Information Retrieval, 2002

Algorithms for Local Alignment with Length Constraints.

Abdullah N. Arslan, Ömer Egecioglu

Proceedings of the LATIN 2002: Theoretical Informatics, 2002

2001

A new approach to sequence comparison: normalized sequence alignment.

Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner

Bioinform., 2001

An Improved Upper Bound on the Size of Planar Convex-Hulls.

Abdullah N. Arslan, Ömer Egecioglu

Proceedings of the Computing and Combinatorics, 7th Annual International Conference, 2001

1999

An Efficient Uniform-Cost Normalized Edit Distance Algorithm.

Abdullah N. Arslan, Ömer Egecioglu

Proceedings of the Sixth International Symposium on String Processing and Information Retrieval and Fifth International Workshop on Groupware, 1999