Abbas Shirinifard

According to our database, Abbas Shirinifard authored at least 8 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Ethome: tools for machine learning of animal behavior.

Benjamin Lansdell, Abbas Shirinifard

J. Open Source Softw., April, 2024

YOLO2U-Net: Detection-guided 3D instance segmentation for microscopy.

Amirkoushyar Ziabari, Derek C. Rose, Abbas Shirinifard, David J. Solecki

Pattern Recognit. Lett., 2024

2019

A Two-Tier Convolutional Neural Network for Combined Detection and Segmentation in Biological Imagery.

Amirkoushyar Ziabari, Abbas Shirinifard, Matthew R. Eicholtz, David J. Solecki, Derek C. Rose

Proceedings of the 2019 IEEE Global Conference on Signal and Information Processing, 2019

A 2.5d Yolo-Based Fusion Algorithm for 3d Localization Of Cells.

Amirkoushyar Ziabari, Derek C. Rose, Matthew R. Eicholtz, David J. Solecki, Abbas Shirinifard

Proceedings of the 53rd Asilomar Conference on Signals, Systems, and Computers, 2019

2014

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.

James P. Sluka, Abbas Shirinifard, Maciej Swat, Alin Cosmanescu, Randy W. Heiland, James A. Glazier

Bioinform., 2014

2012

Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study.

Abbas Shirinifard, James A. Glazier, Maciej Swat, J. Scott Gens, Fereydoon Family, Yi Jiang, Hans E. Grossniklaus

PLoS Comput. Biol., 2012

Visualizing cells and their connectivity graphs for CompuCell3D.

Randy W. Heiland, Abbas Shirinifard, Maciej Swat, Gilberto L. Thomas, James P. Sluka, Andrew Lumsdaine, Benjamin Zaitlen, James A. Glazier

Proceedings of the 2012 IEEE Symposium on Biological Data Visualization, 2012

2008

Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth.

Roeland Merks, Erica D. Perryn, Abbas Shirinifard, James A. Glazier

PLoS Comput. Biol., 2008