Aaron R. Quinlan

According to our database, Aaron R. Quinlan authored at least 19 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Author Correction: Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools.

Hao Hou, Brent S. Pedersen, Aaron R. Quinlan

Nat. Comput. Sci., 2022

Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate.

Thomas J. Nicholas, Michael J. Cormier, Aaron R. Quinlan

BMC Bioinform., 2022

Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies.

Michael J. Cormier, Brent S. Pedersen, Pinar Bayrak-Toydemir, Aaron R. Quinlan

BMC Bioinform., 2022

trfermikit: a tool to discover VNTR-associated deletions.

Peter McHale, Aaron R. Quinlan

Bioinform., 2022

2021

Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools.

Hao Hou, Brent S. Pedersen, Aaron R. Quinlan

Nat. Comput. Sci., 2021

Unfazed: parent-of-origin detection for large and small de novo variants.

Jonathan R. Belyeu, Thomas A. Sasani, Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2021

2020

XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data.

Jordan A. Berg, Jonathan R. Belyeu, Jeffrey T. Morgan, Yeyun Ouyang, Alex J. Bott, Aaron R. Quinlan, Jason Gertz, Jared Rutter

PLoS Comput. Biol., 2020

2018

Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.

Boris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander V. Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve

Nucleic Acids Res., 2018

hts-nim: scripting high-performance genomic analyses.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2018

Mosdepth: quick coverage calculation for genomes and exomes.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2018

2017

A Parallel Algorithm for $N$-Way Interval Set Intersection.

Ryan M. Layer, Aaron R. Quinlan

Proc. IEEE, 2017

cyvcf2: fast, flexible variant analysis with Python.

Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2017

2015

Population-based structural variation discovery with Hydra-Multi.

Michael R. Lindberg, Ira M. Hall, Aaron R. Quinlan

Bioinform., 2015

2014

Poretools: a toolkit for analyzing nanopore sequence data.

Nicholas J. Loman, Aaron R. Quinlan

Bioinform., 2014

2013

GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations.

Umadevi Paila, Brad A. Chapman, Rory D. Kirchner, Aaron R. Quinlan

PLoS Comput. Biol., 2013

Binary Interval Search: a scalable algorithm for counting interval intersections.

Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan

Bioinform., 2013

2011

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.

Ryan K. Dale, Brent S. Pedersen, Aaron R. Quinlan

Bioinform., 2011

BamTools: a C++ API and toolkit for analyzing and managing BAM files.

Derek W. Barnett, Erik K. Garrison, Aaron R. Quinlan, Michael Strömberg, Gabor T. Marth

Bioinform., 2011

2010

BEDTools: a flexible suite of utilities for comparing genomic features.

Aaron R. Quinlan, Ira M. Hall

Bioinform., 2010