Aaron L. Halpern

According to our database, Aaron L. Halpern authored at least 10 papers between 2001 and 2012.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2012

Computational Techniques for Human Genome Resequencing Using Mated Gapped Reads.

Paolo Carnevali, Jonathan Baccash, Aaron L. Halpern, Igor Nazarenko, Geoffrey B. Nilsen, Krishna P. Pant, Jessica C. Ebert, Anushka Brownley, Matt Morenzoni, Vitali Karpinchyk, Bruce Martin, Dennis G. Ballinger, Radoje Drmanac

J. Comput. Biol., 2012

2011

TreeLign: simultaneous stepwise alignment and phylogenetic positioning, with its application to automatic phylogenetic assignment of 16S rRNAs.

Yuan Li, Aaron L. Halpern, Shaojie Zhang

Proceedings of the ACM International Conference on Bioinformatics, 2011

2008

Consensus generation and variant detection by Celera Assembler.

Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason R. Miller, Nelson Axelrod, Samuel Levy, Granger G. Sutton

Bioinform., 2008

2007

A General Paradigm for Fast, Adaptive Clustering of Biological Sequences.

Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, Aaron L. Halpern

Proceedings of the German Conference on Bioinformatics, 2007

2004

Syntenic Layout of Two Assemblies of Related Genomes.

Olaf Delgado-Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson

Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2002

Segment Match Refinement and Applications.

Aaron L. Halpern, Daniel H. Huson, Knut Reinert

Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Efficiently detecting polymorphisms during the fragment assembly process.

Daniel P. Fasulo, Aaron L. Halpern, Ian M. Dew, Clark M. Mobarry

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001

Comparing Assemblies Using Fragments and Mate-Pairs.

Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton

Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

Visualization challenges for a new cyberpharmaceutical computing paradigm.

Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail

Proceedings of the IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics, 2001

Design of a compartmentalized shotgun assembler for the human genome.

Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001