Aaron E. Darling

According to our database, Aaron E. Darling authored at least 18 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Fidelity of hyperbolic space for Bayesian phylogenetic inference.

Matthew Macaulay, Aaron E. Darling, Mathieu Fourment

PLoS Comput. Biol., 2023

2021

qc3C: Reference-free quality control for Hi-C sequencing data.

Matthew Z. DeMaere, Aaron E. Darling

PLoS Comput. Biol., 2021

2015

Metagenomic Chromosome Conformation Capture (3C): techniques, applications, and challenges.

Michael Liu, Aaron E. Darling

F1000Research, 2015

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.

David Coil, Guillaume Jospin, Aaron E. Darling

Bioinform., 2015

2012

Hidden Breakpoints in Genome Alignments.

Birte Kehr, Knut Reinert, Aaron E. Darling

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

The rise and fall of breakpoint reuse depending on genome resolution.

Oliver Attie, Aaron E. Darling, Sophia Yancopoulos

BMC Bioinform., 2011

Mauve Assembly Metrics.

Aaron E. Darling, Andrew J. Tritt, Jonathan A. Eisen, Marc T. Facciotti

Bioinform., 2011

2009

A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.

Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Reordering contigs of draft genomes using the Mauve Aligner.

Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna

Bioinform., 2009

Seevolution: visualizing chromosome evolution.

Andrés Esteban-Marcos, Aaron E. Darling, Mark A. Ragan

Bioinform., 2009

2008

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.

Jeremy D. Glasner, Guy Plunkett III, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Thomas Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna

Nucleic Acids Res., 2008

Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats.

Todd J. Treangen, Aaron E. Darling, Mark A. Ragan, Xavier Messeguer

Proceedings of the Bioinformatics Research and Applications, 2008

2006

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data.

Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna

Nucleic Acids Res., 2006

Procrastination Leads to Efficient Filtration for Local Multiple Alignment.

Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna

Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2004

GRIL: genome rearrangement and inversion locator.

Aaron E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna

Bioinform., 2004

Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes.

Bob Mau, Aaron E. Darling, Nicole T. Perna

Proceedings of the Comparative Genomics, 2004

Multiple Alignment of Rearranged Genomes.

Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna

Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003

ASAP, a systematic annotation package for community analysis of genomes.

Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron E. Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael K. Gilson, Bryan S. Biehl, Frederick R. Blattner, Nicole T. Perna

Nucleic Acids Res., 2003