Aalt D. J. van Dijk

According to our database, Aalt D. J. van Dijk authored at least 16 papers between 2006 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics.

Aalt D. J. van Dijk, Shin-Han Shiu, Dick de Ridder

Frontiers Artif. Intell., 2022

2021

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases.

Janani Durairaj, Elena Melillo, Harro J. Bouwmeester, Jules Beekwilder, Dick de Ridder, Aalt D. J. van Dijk

PLoS Comput. Biol., 2021

2020

Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines.

Yan Wang, Miguel Correa Marrero, Marnix H. Medema, Aalt D. J. van Dijk

Bioinform., 2020

2019

Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis.

Miguel Correa Marrero, Richard G. H. Immink, Dick de Ridder, Aalt D. J. van Dijk

Bioinform., 2019

2016

Selected proceedings of Machine Learning in Systems Biology: MLSB 2016.

Aalt D. J. van Dijk, Harri Lähdesmäki, Dick de Ridder, Juho Rousu

BMC Bioinform., 2016

2013

Mining Minimal Motif Pair Sets Maximally Covering Interactions in a Protein-Protein Interaction Network.

Peter Boyen, Frank Neven, Dries Van Dyck, Felipe L. Valentim, Aalt D. J. van Dijk

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes.

Yiannis Kourmpetis, Aalt D. J. van Dijk, Cajo J. F. ter Braak

Algorithms Mol. Biol., 2013

2011

SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks.

Peter Boyen, Dries Van Dyck, Frank Neven, Roeland C. H. J. van Ham, Aalt D. J. van Dijk

IEEE ACM Trans. Comput. Biol. Bioinform., 2011

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments.

Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk

Nucleic Acids Res., 2011

Correlated mutations via regularized multinomial regression.

Janrdanan Sreekumar, Cajo J. F. ter Braak, Roeland C. H. J. van Ham, Aalt D. J. van Dijk

BMC Bioinform., 2011

2010

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction.

Aalt D. J. van Dijk, Giuseppa Morabito, Martijn Fiers, Roeland C. H. J. van Ham, Gerco C. Angenent, Richard G. H. Immink

PLoS Comput. Biol., 2010

Continuous-time modeling of cell fate determination in Arabidopsis flowers.

Simon van Mourik, Aalt D. J. van Dijk, Maarten de Gee, Richard G. H. Immink, Kerstin Kaufmann, Gerco C. Angenent, Roeland C. H. J. van Ham, Jaap Molenaar

BMC Syst. Biol., 2010

2009

SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks.

Peter Boyen, Frank Neven, Dries Van Dyck, Aalt D. J. van Dijk, Roeland C. H. J. van Ham

Proceedings of the ICDM 2009, 2009

2008

Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control.

Aalt D. J. van Dijk, Cajo J. F. ter Braak, Richard G. H. Immink, Gerco C. Angenent, Roeland C. H. J. van Ham

Bioinform., 2008

Predicting sub-Golgi localization of type II membrane proteins.

Aalt D. J. van Dijk, D. Bosch, Cajo J. F. ter Braak, A. R. van der Krol, Roeland C. H. J. van Ham

Bioinform., 2008

2006

Solvated docking: introducing water into the modelling of biomolecular complexes.

Aalt D. J. van Dijk, Alexandre M. J. J. Bonvin

Bioinform., 2006