Wout Bittremieux

According to our database, Wout Bittremieux authored at least 14 papers between 2015 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

DRAM-Based Acceleration of Open Modification Search in Hyperdimensional Space.

Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Niema Moshiri, Tajana Simunic Rosing

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., September, 2024

Semisupervised Learning to Boost hERG, Nav1.5, and Cav1.2 Cardiac Ion Channel Toxicity Prediction by Mining a Large Unlabeled Small Molecule Data Set.

Issar Arab, Kris Laukens, Wout Bittremieux

J. Chem. Inf. Model., 2024

Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction.

Issar Arab, Kristof Egghe, Kris Laukens, Ke Chen, Khaled H. Barakat, Wout Bittremieux

J. Chem. Inf. Model., 2024

MassSpecGym: A benchmark for the discovery and identification of molecules.

Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, Bo Wang, David S. Wishart, Li-Ping Liu, Juho Rousu, Wout Bittremieux, Hannes Rost, Tytus D. Mak, Soha Hassoun, Florian Huber, Justin J. J. van der Hooft, Michael A. Stravs, Sebastian Böcker, Josef Sivic, Tomás Pluskal

CoRR, 2024

RapidOMS: FPGA-based Open Modification Spectral Library Searching with HD Computing.

Sumukh Pinge, Weihong Xu, Wout Bittremieux, Niema Moshiri, Sang-Woo Jun, Tajana Rosing

CoRR, 2024

SpecHD: Hyperdimensional Computing Framework for FPGA-Based Mass Spectrometry Clustering.

Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing

Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2024

2023

The pitfalls of negative data bias for the T-cell epitope specificity challenge.

Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman

Nat. Mac. Intell., October, 2023

2022

De novo mass spectrometry peptide sequencing with a transformer model.

Melih Yilmaz, William Fondrie, Wout Bittremieux, Sewoong Oh, William S. Noble

Proceedings of the International Conference on Machine Learning, 2022

Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing.

Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing

Proceedings of the International Conference on Parallel Architectures and Compilation Techniques, 2022

2021

Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.

Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman

Briefings Bioinform., 2021

2019

Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.

Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2018

Grasping frequent subgraph mining for bioinformatics applications.

Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens

BioData Min., 2018

2017

Computational solutions for quality control of mass spectrometry-based proteomics

Wout Bittremieux

PhD thesis, 2017

2015

A primer to frequent itemset mining for bioinformatics.

Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens

Briefings Bioinform., 2015